New ChIP-seq control
Ok, so I've finally implemented and debugged a second type of control in FindPeaks... It's different, and it seems to be more sensitive, requiring less assumptions to be made about the data set itself.
What it needs, now, is some testing. Is anyone out there willing to try a novel form of control on a dataset that they have? (I won't promise it's flawless, but hey, it's open source, and I'm willing to bug fix anything people find.)
If you do, let me know, and I'll tell you how to activate it. Let the testing begin!
What it needs, now, is some testing. Is anyone out there willing to try a novel form of control on a dataset that they have? (I won't promise it's flawless, but hey, it's open source, and I'm willing to bug fix anything people find.)
If you do, let me know, and I'll tell you how to activate it. Let the testing begin!
Labels: Algorithms, application development, Bioinformatics, Chip-Seq, FindPeaks, Vancouver Short Read Analysis Package
2 Comments:
Here!
Hi dawe,
I've put it into the manual: "-control_type 1"
Cheers!
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